All application generated by our lab could be downloaded and chosen free of cost of cost by academic as well as other non-profit researchers. Business utilization of the ScanAlyze, Cluster and/or TreeView executable and/or source code requries a license from Stanford University. For specifics on how to obtain a license, make sure you click right here.
Commercial utilization of the GMEP application calls for a license from Lawrence Berkeley Nationwide Lab.
For info regarding how to achieve a license,
Windows 7 32bit, make sure you contact LBNL's Solutions Transfer Division. Register Right here Registration is free of charge, and it is implemented to track utilization and also to supply application updates. Registration is just not necessary to download application.
Microarray Picture Analysis ScanAlyze [Download] [Previous versions]:
Method fluorescent pictures of microarrays. Consists of semi-automatic definition of grids and complicated pixel and spot analyses. Outputs to tab-delimited text files for transfer to any database. Composed by Michael Eisen. For Windows only. Manual. Supply Code.
Existing version two.fifty. Up-to-date November 27,2002.
Cluster Evaluation and Visualization Cluster and TreeView are an integrated pair of plans for analyzing and visualizing the outcomes of complicated microarray experiments. Both equally written by Michael Eisen.
Cluster [Download] [Previous versions]: Execute an assortment of sorts of cluster evaluation as well as other varieties of processing on large microarray datasets. At the moment comes with hierarchical clustering, self-organizing maps (SOMs), k-means clustering, principal component analysis.Hierarchical clustering options described in Eisen et al. (1998) PNAS 95:14863. For Windows only.
Present model two.11. .
Manual. Source Code. Demo Info.
Michiel de Hoon of the University of Tokyo has produced a edition of Cluster (described as Cluster three.0) that implements exactly the same algorithms as my software system,
Office 2010 Product Key, but will run on Windows,
Office Ultimate 2007, Mac OS X, Linux and UNIX. It truly is on the market here.
FuzzyK [Download]
FuzzyK is often a C++ command line system that will complete fuzzy k-means clustering on gene expression information. See Gasch AP and Eisen MB (2002). Exploring the conditional coregulation of yeast gene expression due to fuzzy k-means clustering. Genome Biology 3(eleven), 1-22.
TreeView [Download] [Previous versions]: Graphically browse final results of clustering as well as other analyses from Cluster. Supports tree-based and image based mostly searching of hierarchical trees. Various output formats for era of photographs for publications. For Windows only.
Existing model 1.sixty. Updated December six,
Windows 7 Professional Product Key, 2002. Maple Tree [Download]
Maple Tree is often a java-based, open source, cross-platform visualization instrument to graphically browse the outcomes of clustering analyses from our Cluster and Fuzzy K clustering software programs, and many other clustering and analysis plans.
Maple Tree was formulated by Lisa Simirenko in our lab.
Combined Expression Information and Sequence Evaluation GMEP [Download] (to choose from for Unix only): Compute genome-mean expression profiles from expression
and sequence info. See Chiang et al. Bioinformatics 17(S1):49-55.
Sequence Evaluation GATA [Download] (platform independent): Graphic Alignment Instrument for Comparative Sequence Evaluation. GATA was developed by David Nix in our lab.
TFEM [Download](ANSI C code): Transcription Issue Expectation Maximization,
Office Enterprise 2007, an algorithm for detecting DNA regulatory motifs by incorperating positional developments in important information subject matter.