All program generated by our lab may well be downloaded and used free of cost by academic as well as other non-profit researchers. Industrial use of the ScanAlyze, Cluster and/or TreeView executable and/or source code requries a license from Stanford University. For specifics concerning how to attain a license, make sure you click on right here.
Business use of the GMEP software package needs a license from Lawrence Berkeley Nationwide Lab.
For information and facts concerning how to attain a license, please speak to LBNL's Technologies Transfer Division. Register Here Registration is zero cost, and it is implemented to track use and to deliver software package updates. Registration shouldn't be needed to download software.
Microarray Image Evaluation ScanAlyze [Download] [Previous versions]:
Operation fluorescent photos of microarrays. Consists of semi-automatic definition of grids and complicated pixel and spot analyses. Outputs to tab-delimited text files for transfer to any database. Published by Michael Eisen. For Windows only. Manual. Supply Code.
Present model two.50. Updated November 27,
Office 2007 Standard Key,2002.
Cluster Analysis and Visualization Cluster and TreeView are an integrated pair of plans for analyzing and visualizing the results of complex microarray experiments. Equally published by Michael Eisen.
Cluster [Download] [Previous versions]: Execute various different types of cluster analysis and also other kinds of processing on huge microarray datasets. Now incorporates hierarchical clustering,
Windows 7, self-organizing maps (SOMs), k-means clustering, principal component analysis.Hierarchical clustering systems described in Eisen et al. (1998) PNAS 95:14863. For Windows only.
Current model two.11. .
Manual. Supply Code. Demo Data.
Michiel de Hoon for the University of Tokyo has made a edition of Cluster (termed Cluster three.0) that implements the identical algorithms as my software,
Office 2010 Home And Business Key, but will run on Windows, Mac OS X,
Office 2007, Linux and UNIX. It's accessible right here.
FuzzyK [Download]
FuzzyK is usually a C++ command line system that should complete fuzzy k-means clustering on gene expression info. See Gasch AP and Eisen MB (2002). Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. Genome Biology 3(eleven), 1-22.
TreeView [Download] [Previous versions]: Graphically browse effects of clustering along with other analyses from Cluster. Supports tree-based and picture based searching of hierarchical trees. Different output formats for generation of images for publications. For Windows only.
Present version one.sixty. Up to date December 6, 2002. Maple Tree [Download]
Maple Tree is actually a java-based, open resource, cross-platform visualization instrument to graphically browse the results of clustering analyses from our Cluster and Fuzzy K clustering software program, and lots of other clustering and analysis programs.
Maple Tree was created by Lisa Simirenko in our lab.
Combined Expression Info and Sequence Evaluation GMEP [Download] (on hand for Unix only): Compute genome-mean expression profiles from expression
and sequence info. See Chiang et al. Bioinformatics 17(S1):49-55.
Sequence Analysis GATA [Download] (platform independent): Graphic Alignment Device for Comparative Sequence Evaluation. GATA was produced by David Nix within our lab.
TFEM [Download](ANSI C code): Transcription Issue Expectation Maximization,
Windows 7 Pro Product Key, an algorithm for detecting DNA regulatory motifs by incorperating positional developments in info subject matter.
Office 2007 Standard Key EisenLab
Threaded Mode